The marine ecoregions of the South African exclusive economic zone are a set of geographically delineated regions of similar ecological characteristics on a fairly broad scale, covering the exclusive economic zone along the South African coast.

There were originally five inshore bioregions defined over the continental shelf and four offshore bioregions covering the continental slope and abyssal regions. These bioregions were used for conservation research and planning. They were defined in the South African National Spatial Biodiversity Assessment of 2004.

The South African National Spatial Biodiversity Assessment of 2011 amended this to reduce the number of regions to four inshore and two offshore and rename them as ecoregions.

The exclusive economic zone

An exclusive economic zone (EEZ) is a sea zone prescribed by the United Nations Convention on the Law of the Sea over which a state has special rights regarding the exploration and use of marine resources, including energy production from water and wind. It stretches from the baseline out to 200 nautical miles (nmi) from its coast. The term does not generally include either the territorial sea or the continental shelf beyond the 200 nmi limit. but in this context territorial waters are included. The difference between the territorial sea and the exclusive economic zone is that the first confers full sovereignty over the waters, whereas the second is merely a "sovereign right" which refers to the coastal state's rights below the surface of the sea. The surface waters of the EEZ beyond territorial waters are international waters.

History The first mapping of South African marine habitats was done in a series of workshops led by the NSBA marine team culminating in a marine biodiversity assessment report in of the South African National Spatial Biodiversity Assessment of 2004. This indicated 34 marine biozones extending from the supratidal zone to the border of the exclusive economic zone. They allow for future refinement where necessary. Nine South African marine bioregions were defined in the South African National Spatial Biodiversity Assessment (NSBA) 2004.

The five inshore bioregions of 2004 were consolidated to four in the 2011 assessment. The Namaqua and southwestern Cape inshore bioregions became the southern Benguela shelf ecoregion. Similarly the Indo-Pacific offshore bioregion, the South-west Indian offshore bioregion, and the West Indian offshore bioregion were combined to become the Southwest Indian ecoregion, reducing the four offshore bioregions to two deepsea ecoregions. The other bioregions were renamed to ecoregions. The resulting regions are: Benguela, Agulhas, Natal, and Delagoa ecoregions, which include the coast, continental shelf and shelf edge, and the Southeast Atlantic and Southwest Indian ecoregions include the upper and lower continental slope and abyssal regions.

The regions

Depth zones The regions are divided into benthic depth zones. Along the coastline there are supratidal, above the high-water mark, intertidal between high and low water, shallow photic, or subtidal shoreface, where there is turbulence and enough light for seaweeds to flourish, down to about 10 m, deep photic, where there is less light, down to about 30 m, and sub-photic (lightless) zones, down to the edge of the continental shelf, which varies from about 400 m in the northern part of the west coast, to 200 m in the Agulhas region, 100 m off Natal, and can be shallow as 50 m in the Delagoa bioregion. The shelf break is defined by the slope angle of the seabed. The offshore regions include upper slope, from the shelf break down to about 1800 m, lower slope, and abyss, below 3500 m. The end boundaries of the supratidal zone do not generally coincide with the bioregion boundaries.

Inshore regions Five inshore marine bioregions that extend from the shoreline to the break of the continental shelf were defined. Boundaries between them are difficult to define, and overlaps between regions are accepted, because available species data may indicate large sections of coast with few endemics, and many species are found spread across more than one region.

West coast

Benguela ecoregion This is the region comprising the consolidated Namaqua and South-western Cape bioregions.

Namaqua bioregion This is a cool temperate region between Sylvia Hill just north of Lüderitz in Namibia to Cape Columbine. Sylvia Hill is the northern boundary of a large upwelling cell. The bioregion has large-scale intensive upwelling and nutrient rich water, and the cold Benguela current. The region is known for low oxygen events and it contains extensive mud banks and a relatively wide continental shelf. It is a productive bioregion and supports major commercial fisheries. In the 2011 assessment it was combined with the South-western Cape bioregion to form the Benguela ecoregion.

South-western Cape region This region has a relatively narrow continental shelf. There is a change in geology at Cape Columbine which marks the northern extent of the exposed granite, and there is less offshore mud habitat south of this break. This region includes the two underwater canyons, Cape Point Valley and Cape Canyon, and there are large areas of rocky reef. The change in biology at Cape Columbine is indicated by change in seaweed and intertidal communities. There is less tendency for oxygen deficient bottom water than in the area further north. This region supports trawl and longline fisheries for hake, pelagic fisheries for anchovy, pilchard and roundherring, and a longline shark fishery. The break at the south-eastern end of the region is at Cape Point, where it is distinct in the inshore and tidal habitats, but the change in deeper water tends obliquely to the south-east, and is more diffuse, due to mixing of the Benguela and Agulhas currents between these regions. In the 2011 assessment it was combined with the Namaqua bioregion to form the Benguela ecoregion.

South coast

Agulhas region The region from Cape Point to the Mbashe river is known as the Agulhas bioregion. The south coast comprises a warm temperate component from Mbashe to Cape Agulhas, and a large overlap zone between Cape Agulhas and Cape Point where waters of the two currents mix. The continental shelf is at its widest in this region, extending up to 240km offshore on the Agulhas Bank. The shelf edge includes areas of extensive slumping. There are several areas of reef on the Agulhas Bank, including the Alphard banks. This region has the highest number of South African endemics, and is a breeding area for many species. There are several important commercial fisheries including squid, horse mackerel, shark, and lobster. It was renamed to Agulhas ecoregion in the 2011 assessment.

East coast

Natal region The Natal bioregion, from the Mbashe River in the south-west to Cape Vidal in the north, is characterised by a narrow continental shelf, with widths ranging from less than five km to a maximum of 50 km off the Tugela bank. This region has high riverine input and includes the Thukela river, which is the largest river system in KwaZulu-Natal. The oceanographic driving force of this bioregion is the Agulhas Current, with strong influence north of Cape St Lucia and south of Port Shepstone where the shelf is narrowest. In the Natal bight, south of Cape St Lucia, where the coastline is more distant from the shelf edge, there is a dynamically driven upwelling cell which is an important source of nutrients for the Tugela Bank. A cyclonic eddy near Durban sometimes causes a northward current to flow between Aliwal Shoal and Ballito. The submarine canyons in the Natal bioregion include the Tugela and Goodlad canyons in the north and several others between Port Shepstone and Port St Johns. Reefs occur mainly in the southern and central areas within this bioregion and there is an important deep reef complex along most of this coastline. A commercial line fishery largely based on surf-launched vessels is important in this region, and the annual sardine run occurs in the southern coastal waters. Limited reef habitat is represented by the major complexes at Protea banks and Aliwal shoal. Biological communities of the rocky reefs in this region are different from the coral communities further north, as reef-building Indo-Pacific corals decline with the increased turbidity in the southern waters and are replaced by endemic soft corals. There are major estuarine systems including Durban Bay, Richards Bay and the St Lucia system, and the Tugela mud banks are the only mud belt on the east coast, with unique biotic assemblages. They support prawn fisheries offshore and are nursery areas for elasmobranchs and bony fish. It was renamed to Natal ecoregion in the 2011 assessment.

Delagoa region The Delagoa bioregion from Inhaca to Cape Vidal has a narrow continental shelf, a shallow steep shelf break and a large number of submarine canyons. The warm Agulhas current is a dominant feature. It flows strongly southward along the shelf. There is little riverine inflow, so the water remains clear and the reefs are colonised by scleractinian corals. The sediments are medium to fine grained sands and carbonate rich gravel and rubble. Nesting beaches of leatherback and loggerhead turtles can be found. The coastline includes occasional bays with rocky headlands, and long sandy beaches. There are no commercial fisheries in the South African part of this bioregion. It was renamed to Delagoa ecoregion in the 2011 assessment.

Offshore

A further four offshore bioregions extending from the break of the continental shelf to the border of the EEZ were defined in the 2004 assessment.

The offshore bioregions were defined based on the assumption that the marine biota of the deeper waters is more homogeneous than on the continental shelf, as the deeper water has more consistent temperature. This results in a smaller number of offshore bioregions. In most cases the boundary between bioregions was chosen as a straight line perpendicular to the coast, except for the break at Cape Point, which runs due south to the 30 m isobath then follows the 150 m isobath to 21°East. This approximates the line of the mixing zone between the Benguela and Agulhas currents, which separates their fish communities. This line divides the Agulhas bank into a western part which is considered part of the South-western Cape bioregion, and an eastern part which is in the Agulhas bioregion. The Cape Point break is extended south over the shelf break, down to the abyss and to the border of the EEZ. The region to the west of this break is the Atlantic Offshore bioregion, which is offshore of both the Namaqua and South-western Cape inshore regions. To the east of this break, the West Indian offshore bioregion comprises the upper and lower continental slope as far north-east as the Cape Vidal break. The abyssal region below this part of the slope is designated as the Indo-Pacific offshore bioregion. North of the Cape Vidal break, the slope is designated as the South-west Indian offshore bioregion. There is no abyssal region within the EEZ this far north. The three offshore bioregions east of Cape Agulhas were combined in the 2011 assessment.

Habitat types The following marine habitat types have been identified as ecologically distinct. Agulhas boulder shore Agulhas canyon Agulhas dissipative sandy coast Agulhas dissipative-intermediate sandy coast Agulhas estuarine shore Agulhas exposed rocky coast Agulhas gravel inner shelf Agulhas gravel outer shelf Agulhas gravel shelf edge Agulhas hard inner shelf Agulhas hard outer shelf Agulhas hard shelf edge Agulhas inshore gravel Agulhas inshore hard grounds Agulhas inshore reef Agulhas intermediate sandy coast Agulhas island Agulhas mixed sediment inner shelf Agulhas mixed sediment outer shelf Agulhas mixed shore Agulhas muddy inner shelf Agulhas muddy outer shelf Agulhas muddy shelf edge Agulhas outer shelf reef