The 2016 Japanese Regional Leagues were a competition between parallel association football leagues ranking at the bottom of the Japan Football League.

Champions list Qualified for the 40th Promotion Regional Series RegionChampionsHokkaidoNorbritz HokkaidoTohokuCobaltore OnagawaKantōTokyo 23 FCHokushinetsuArtista TomiTokaiFC KariyaKansaiArterivo WakayamaChūgokuSRC HiroshimaShikokuFC ImabariKyushuJ.FC Miyazaki

Hokkaido

Tohoku

Division 1

Division 2 North

Division 2 South

Kantō

Division 1

Division 2

Hokushinetsu

Division 1

Division 2

Tōkai

Division 1

Division 2

Kansai

Division 1

Division 2

Chūgoku

Shikoku

Kyushu