Functional connectivity software is used to study functional properties of the connectome using functional Magnetic Resonance Imaging (fMRI) data in the resting state and during tasks. To access many of these software applications visit the NIH funded Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC) site.
Name Description Programming language Is part of / requires Developer/Organization CONN Functional connectivity analysis and display tool Matlab SPM McGovern Institute for Brain Research, Massachusetts Institute of Technology: MIT DCM Dynamic Causal Modelling analysis Matlab SPM Wellcome Trust Centre for Neuroimaging, University College London FATCAT Functional and tractographic connectivity analysis C AFNI Scientific and Statistical Computing Core, National Institute of Mental Health: NIMH FSFC Seed-based functional connectivity analysis Shell FreeSurfer Martinos Center for Biomedical Imaging MELODIC Independent component analysis C FSL Functional Magnetic Resonance Imaging of the Brain Analysis Group, Oxford University
See also List of neuroimaging software Functional connectivity Neuroimaging
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