The 1940–41 Greek Football Cup was never completed, due to the invasion of Greece by Italy. Only the first round was carried out.

First round

|colspan="5" style="background-color:#D0D0D0" align=center|Athens Football Clubs Association ||colspan="2"

||colspan="2" rowspan="3"

|colspan="5" style="background-color:#D0D0D0" align=center|Piraeus Football Clubs Association ||colspan="2" rowspan="3"

|colspan="5" style="background-color:#D0D0D0" align=center|Thessaly Football Clubs Association ||colspan="2" rowspan="5"

|colspan="5" style="background-color:#D0D0D0" align=center|Macedonia Football Clubs Association ||colspan="2" rowspan="3"

|colspan="5" style="background-color:#D0D0D0" align=center|Eastern Macedonia/Thrace Football Clubs Association ||colspan="2" rowspan="4"

|colspan="5" style="background-color:#D0D0D0" align=center|Patras Football Clubs Association ||colspan="2" rowspan="5"

References

External links np. "Athnlitismos", October 1940.